PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G00050.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 360aa    MW: 39635.2 Da    PI: 7.5281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G00050.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.1e-13253337383
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+lt+sdv++ gr+vlpkk ae+    + ++ +  l + d       +W++k++y  ++ks++y+l     eF k +gL++gD+++++
  ONIVA08G00050.2 253 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMDD--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 337
                      899******************9998844445565566666..3446*********777777777777.99***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-16250338IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-19250348No hitNo description
Gene3DG3DSA:2.40.330.101.8E-20250345IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.557251353IPR003340B3 DNA binding domain
SMARTSM010196.1E-7251351IPR003340B3 DNA binding domain
PfamPF023621.0E-9253337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGAEPPHPHN HNHNHNHNIH  60
NSHNHNHNHN AAPHPCHTPT PTPTPRGFAD WSASTSAFTS LAAHSSTAPS NAVHYSFSPC  120
YAFWTHYMLN KNAYPTSFPA PHDDHLRLAN NNHPTDAPGP ASSYGVESFT SPSMAPNICT  180
HMPPIEGPIS AKEDKKPEIL PRVVKSSDEL ETRNSNVEFH SETVGTLPES KQGHDSRATK  240
LLNSGEYQVI LRKELTKSDV GNVGRIVLPK KDAEASLPPL LQRDPLILHM DDMVLPVTWK  300
FKYRYWPNNK SRMYILDSAG EFLKTHGLQA GDVIIIYKNL APGKFIIRGE KAIHQQTTNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074560.0AK107456.1 Oryza sativa Japonica Group cDNA clone:002-128-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648159.10.0PREDICTED: B3 domain-containing protein IDEF1 isoform X1
SwissprotQ6Z1Z30.0IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLA0A0E0I6740.0A0A0E0I674_ORYNI; Uncharacterized protein
STRINGLOC_Os08g01090.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-34B3 family protein